Burrows-Wheeler transform preprints

See other preprint channels in Computer Science.

Register as an editor for this theme. See keywords used to identify matching preprints

If you believe a preprint is missing from this list it is possible that we have not yet indexed it. Please use search function to help us index it.


Preprint Authors Date Reviews & Comments Intersect Actions
deGSM: memory scalable construction of large scale de Bruijn Graph 11th Aug 2018
genome_assembly metagenomics Bookmark
Prefix-Free Parsing for Building Big BWTs. T. Gagie, G. Manzini 2nd Apr 2018
Bookmark
Universal Deep Neural Network Compression. Y. Choi, J. L. . M. El-Khamy 8th Feb 2018
Bookmark
MSAC: Compression of multiple sequence alignment files S. Deorowicz, J. Walczyszyn, A. Debudaj-Grabysz Dec 2017
Bookmark
Closing in on Time and Space Optimal Construction of Compressed Indexes. D. Kempa Dec 2017
Bookmark
Lyndon Array Construction during Burrows-Wheeler Inversion. F. A. Louza, G. M. . W. F. S. . G. P. Telles Oct 2017
Bookmark
String Attractors. N. Prezza Sep 2017
Bookmark
CHIC: a short read aligner for pan-genomic references D. Valenzuela, V. Mäkinen, Aug 2017
Bookmark
Efficient pattern matching in degenerate strings with the Burrows-Wheeler transform. J. W. Daykin...
B. W. L. Prieur-Gaston
Aug 2017
Bookmark
Fast Locating with the RLBWT. T. Gagie, N. P. . G. Navarro May 2017
Bookmark
Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows-Wheeler Transform A. Naseri...
D. Zhi
Jan 2017
Bookmark
Improved long read correction for de novo assembly using an FM-index J. M. Holt...
L. McMillan
Aug 2016
genome_assembly Bookmark
A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference S. Maciuca...
Z. Iqbal
Jun 2016
Bookmark
Reference-based phasing using the Haplotype Reference Consortium panel P. Loh...
A. L. Price
May 2016
Comments
Bookmark
A Graph Extension of the Positional Burrows-Wheeler Transform and its Applications A. M. Novak, E. Garrison, B. Paten May 2016
Bookmark
Faster Average Case Low Memory Semi-External Construction of the Burrows-Wheeler Transform G. Tischler, Apr 2016
Bookmark
Fast haplotype matching in very large cohorts using the Li and Stephens model G. Lunter, Apr 2016
Comments
Bookmark
PALADIN:Protein Alignment for Functional Profiling Whole Metagenome Shotgun Data A. Westbrook...
M. MacManes
Apr 2016
metagenomics Bookmark
Burrows-Wheeler transform for terabases J. Siré, n, Jan 2016
Bookmark
Efficient Privacy-Preserving String Search and an Application in Genomics K. Shimizu...
G. Rätsch
Nov 2015
Bookmark